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Why are My Seaborn Heatmaps Truncating the First and Last Rows?

Mary-Kate Olsen
Release: 2024-12-06 04:03:17
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Why are My Seaborn Heatmaps Truncating the First and Last Rows?

Truncated Heatmap Rows: Pitfalls with Matplotlib and Seaborn

Question:

Users have observed that the first and last rows of heatmaps generated using Seaborn are cut in half. This issue persists even when running minimal code examples, as demonstrated below:

import pandas as pd
import seaborn as sns
import matplotlib.pyplot as plt

data = pd.read_csv('https://raw.githubusercontent.com/resbaz/r-novice-gapminder-files/master/data/gapminder-FiveYearData.csv')
plt.figure(figsize=(10,5))
sns.heatmap(data.corr())
plt.show()
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Answer:

Unfortunately, matplotlib 3.1.1 has been found to be incompatible with Seaborn heatmaps and inverted axes with fixed ticks. To rectify this issue:

  • Revert to Matplotlib 3.1.0: Downgrade to a prior version of Matplotlib that does not exhibit this bug.
  • Upgrade to Matplotlib 3.1.2 or Higher: Install the latest version of Matplotlib, which has resolved the issue.
  • Set Heatmap Limits Manually: Use the following code to manually set the y-axis limits:
ax.set_ylim(bottom, top) # set the ylim to bottom, top
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