Avoiding Memory Errors When Importing Large SQL Queries into Pandas DataFrames
Working with massive SQL databases often presents challenges when retrieving large datasets. Attempting to load entire tables exceeding a million rows directly into a Pandas DataFrame can easily lead to memory errors. The following code illustrates this problem:
<code class="language-python">import pandas.io.sql as psql sql = "SELECT TOP 2000000 * FROM MyTable" data = psql.read_frame(sql, cnxn)</code>
This method is prone to failure, resulting in a "MemoryError" if the resulting DataFrame exceeds available RAM.
Pandas, since version 0.15, offers a robust solution: the chunksize
parameter. This allows you to read and process the SQL query in smaller, manageable portions.
Here's how to implement this solution:
<code class="language-python">sql = "SELECT * FROM My_Table" for chunk in pd.read_sql_query(sql , engine, chunksize=5): print(chunk)</code>
By specifying chunksize
, Pandas retrieves data in increments. Each chunk is processed individually, preventing memory overload. The example above prints each chunk; you can adapt this to perform other operations on each chunk as needed.
This technique provides a practical and memory-efficient way to handle large SQL queries, ensuring smooth data processing even with substantial datasets.
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